nf-core
community collection of Nextflow pipelines
TLDR
List pipelines
$ nf-core list
Download pipeline$ nf-core download [pipeline-name]
Launch pipeline$ nf-core launch [pipeline-name]
Create new pipeline$ nf-core create
Lint pipeline$ nf-core lint
Show pipeline info$ nf-core info [pipeline-name]
Search pipelines$ nf-core list --search "[keyword]"
SYNOPSIS
nf-core [command] [options]
DESCRIPTION
nf-core is a community collection of Nextflow pipelines. It provides curated bioinformatics workflows.
The tool manages pipeline downloads. Ensures best practices and reproducibility.
PARAMETERS
COMMAND
nf-core subcommand.list
List available pipelines.download
Download pipeline.launch
Interactive pipeline launcher.create
Create new pipeline.lint
Check pipeline quality.--help
Display help information.
CAVEATS
Python-based CLI. Requires Nextflow. Bioinformatics focus.
HISTORY
nf-core was established as a community effort to standardize and share high-quality Nextflow pipelines.