nextflow

nextflow

TLDR

Run a pipeline, use cached results from previous runs

>_ nextflow run [main.nf] -resume
copy

Run a specific release of a remote workflow from GitHub

>_ nextflow run [user/repo] -revision [release_tag]
copy

Run with a given work directory for intermediate files, save execution report

>_ nextflow run [workflow] -work-dir [/path/to/directory] -with-report [report.html]
copy

Show details of previous runs in current directory

>_ nextflow log
copy

Remove cache and intermediate files for a specific run

>_ nextflow clean -force [run_name]
copy

List all downloaded projects

>_ nextflow list
copy

Pull the latest version of a remote workflow from Bitbucket

>_ nextflow pull [user/repo] -hub bitbucket
copy

Update Nextflow

>_ nextflow self-update
copy

Copied to clipboard
free 100$ digital ocean credit